Biology
Newly Discovered Microbes Dubbed ‘Loki’ Might Be the Missing Link in Complex Cell Evolution
For centuries, anthropologists have been looking for the fabled ‘missing link’ in the evolution of humans, a distant ancestor of ours which illustrates the split between our lineage and the one our ape cousins belong to. Lucy, who lived about 3.2 million years ago in Africa and is now classified as a species of Australopithecus, is perhaps the most famous missing link in the evolution of humankind. Other spectacular transitional creatures include Tiktaalik, a link between fish and land-dwelling animals, and Archaeopteryx, a dinosaur-bird hybrid.
Recently, a research team led by scientists from Uppsala University in Sweden has found a possible missing link which is arguably much more important, because it marks the transition between the simplest single-celled microorganisms called prokaryotes, and the more complex eukaryotes, which are the ancestors of all higher life forms. Biologists have dubbed these creatures Lokiarchaeota – Loki, for short.
Here’s a bit of context, to understand the significance of the finding. Prokaryotes are the oldest life forms on our planet, thought to have appeared about 3.5 billion years ago. They are relatively simple and extremely sturdy microorganisms, which explains how they managed to survive in the hellish conditions at the time they appeared, and why they still thrive today. They lack a nucleus, as well as other organelles – hence their name, which roughly translates to before nucleus. Prokaryotes are divided into two large groups, called Archaea and Bacteria.
Eukaryotes (good nucleus), on the other hand, developed much later, about 1.5 to 2 billion years after prokaryotes. They are significantly more complex, comprising a nucleus and a series of organelles. Everything we think of as complex life, from fish, to cats, to people, is a eukaryote.
Until recently, how prokaryotes evolved into eukaryotes was largely a mystery. The fact that Archaea were shown to be closely related to the more complex creatures was also quite puzzling. Here is where Loki comes in.
These ancient microbes were named after the place where they were found: a hydrothermal vent system along the Mid-Atlantic Ridge between Greenland and Norway called Loki’s Castle, located more than 2,300 meters below the surface. The scientists who discovered them have recently published a paper in the journal Nature which shows that many eukaryotic features were already present in archaeons, suggesting that Loki might be an intermediate between the simple microbes and eukaryotes. According to these findings, Loki share many genes with the latter group, indicating that cellular complexity had already emerged in Archaea by the time the first eukaryotes evolved.
Though the picture of what the earliest life forms looked like and how they evolved is still pretty sketchy (after all, we’re talking about microscopic creature which lived billions of years ago), it’s discoveries like this one which help scientists complete the puzzle, one piece at a time.
Biology
A new study shows that the Atlantic Gulf Stream was surprisingly strong during the last ice age
The world was stuck in a big ice age 20,000 years ago. Ice sheets that were two miles thick covered a large portion of North America, Scandinavia, and the British Isles.
Greenhouse gas levels were much lower, it was 6 °C colder, and the sea level was at least 120 meters lower because of all the water trapped in ice sheets. This made the land that is now underwater visible. From France to London, you could have walked through Doggerland. From Russia to Alaska, you could have walked through Beringia.
But our study, which is now out in Nature, has found at least one surprising thing about the climate during the ice age: the Gulf Stream, which moves warm water north through the Atlantic, was stronger and deeper than it is now.
As paleoceanographers (scientists who study the past of the oceans), we wanted to find out how the oceans behaved during the last ice age to get a sense of how climate change might change things in the future.
Water that is warm, from Mexico to Norway
As part of the Gulf Stream, warm, salty water from the Gulf of Mexico flows north today. It keeps the weather in western Europe very mild because a part of it flows through Europe and gives off a lot of heat.
Then, when the surface water goes north of Iceland, it loses enough heat to make it denser, which makes it sink and form deepwater. At depths greater than a mile below the surface, this process starts the global deepwater conveyor belt, which links all of the world’s oceans and moves heat slowly around the planet.
Scientists used to think that the Gulf Stream and other deep and surface ocean currents in the Atlantic meridional overturning circulation were weaker during very cold times, like the last ice age. More sea ice in the Arctic should have cut down on the amount of water sinking from the surface to the deep ocean, which would have slowed down the global deepwater conveyor belt.
Our new study, on the other hand, shows that the Gulf Stream was much stronger and deeper during the last ice age. Even though it is cold because of glaciers and there are huge ice sheets around the northern parts of the Atlantic, this is still the case.
According to our research, the climate during the glaciers may have made the Gulf Stream stronger. During the ice age, winds were much stronger in some parts of the North Atlantic. This would have made the Gulf Stream stronger. So, even though less water was sinking from the surface to the deep ocean, the Gulf Stream was stronger and still carried a lot of heat north, though not as far as it does now.
Putting together how the oceans moved in the past
So we could not use data from weather buoys or satellites to figure out how the ocean would have moved during the last ice age. Instead, we used marine sediment cores, which are long tubes of mud from the ocean floor, as a substitute.
The cores we used were made of mud that had been building up on the seafloor for 25,000 years. They were collected from different spots along the east coast of the US by research vessels from Woods Hole Oceanographic Institution in Massachusetts, where some of our team is based.
We looked at the size of the sediment grains in the mud to figure out how strong the Gulf Stream was during the ice age. Bigger grains meant faster flow, and smaller grains meant slower flow.
We also looked at the shell chemistry of foraminifera, which are tiny organisms with only one cell. We found the line between foraminifera that used to live in warm subtropical waters and those that used to live in colder subpolar waters by comparing data from a range of depths at different sites in the Northwest Atlantic. We were able to figure out how deep the Gulf Stream was when those organisms were alive.
This makes climate predictions less certain
According to our study, changes in wind speed and the melting of the Greenland ice sheet have an impact on the Gulf Stream and the larger network of Atlantic currents. This is a big deal for climate change in the future.
Climate models say that the Gulf Stream will get weaker in the 21st century, partly because there will be less wind. This would make the sea level rise even more along the east coast of the US and make Europe warmer than the rest of the world. If climate change changes the way winds blow in the future, the Gulf Stream will also change. This makes it harder to predict what the weather will be like in the future.
Also, our results show that we shouldn’t say simple things about Atlantic currents and how the climate will change in the future. There are many currents in the Atlantic, and each one has its own behavior and way of reacting to climate change. So, when we talk about how human-caused climate change affects the climate system, we need to be very clear about which part we’re talking about and what that means for different countries.Talking About It
David Thornalley is a professor of ocean and climate science at UCL, and Mark Maslin is a professor of natural sciences there. Jack Wharton is a postdoctoral research fellow in paleoceanography.
This article was taken from The Conversation and shared with a Creative Commons license. Read the first article.
Biology
Living bacteria may still be in a 44,000-year-old wolf that is frozen in permafrost
An ancient wolf that has been frozen like a popsicle for more than 44,000 years has been analyzed by scientists in Russia. The results will give us a lot of information about how it lived as a top predator during the Ice Age.
Over 40 meters (131 feet) of permanent ice covered the Tirekhtyakh River in the Abyysky District in the Far East of Russia in 2021. This is where the wolf was found.
The body was taken to the Academy of Sciences of the Republic of Sakha (Yakutia). Since then, scientists from the Mammoth Museum of the North-Eastern Federal University and the European University at Saint Petersburg have been busy examining it.
Under clean conditions, the team cut open the body and took samples of the organs inside as well as the food that went through the digestive system. The germs in a wolf’s gut might help us figure out what it eats and how healthy it is.
“His stomach has been kept in a pure form, with no other substances present, so the job is not easy.” After the preparation, we hope to get a picture of the plants and animals that lived in the Pleistocene era. We have the chance to find out what it ate because it was a big, busy predator. Albert Protopopov, head of the department for the study of mammoth fauna at the Academy of Sciences of Yakutia, said in a statement, “The things that his victims ate also ended up in his stomach.”
“Also, we chose one premolar tooth to figure out how old the find was biologically.” We can tell that this is an adult male because the teeth are worn down and the sagittal ridge has grown, said Maxim Cheprasov, who is in charge of the lab at the North-Eastern Federal University Mammoth Museum.
Researchers are hopeful that some of the germs that live inside the animal might still be alive after being frozen in a state similar to hibernation for tens of thousands of years at temperatures below zero. We might even be able to use them to help with science today if they have survived.
“Working with the NEFU Mammoth Museum on science projects has helped us learn more about the bacteria that lived in the mammoth steppe during the Pleistocene period.” Expert in the study of diseases and infections at North-Western State Medical University, Artemy Goncharov, said, “We see that living bacteria can survive in fossil animal finds for thousands of years, which are a kind of witnesses of those ancient times.”
“We are hoping for good results that will help us learn a little more about what ancient microbial communities were, what they did, and how many dangerous pathogenic bacteria were in their structure. “Maybe microorganisms will be found that can be used in medicine and biotechnology as promising sources of substances that have biological activity,” Goncharov said.
The North-Eastern Federal University also has another interesting specimen. They just bought a frozen wolf from the Nizhnekolymsk area of Yakutia, Siberia, and they plan to start studying it as soon as they finish studying this one.
This part of the world has a lot of permafrost, which is a layer of forever frozen soil below the Earth’s surface. It is perfect for storing and preserving living things from the Ice Age. In recent years, a wide range of ancient animals, including a 49,000-year-old bird and a beautifully kept puppy named “Dogor,” have been found in this very cold part of Siberia.
Artificial Intelligence
Eric Lefkofsky, the billionaire founder of Groupon, has launched another initial public offering (IPO),tempus is an artificial intelligence (AI) health technology company
Eric Lefkofsky is no stranger to the world of public listings, and he’s gearing up to embark on his fourth venture. With a net worth of nearly $4 billion, this serial entrepreneur has successfully taken three of his own businesses public.
Today, he is the founder of Tempus, a genomic testing and data analysis company that is preparing to go public. However, he gained significant recognition as one of the co-founders of Groupon, a daily deal pioneer. Groupon made headlines in 2011 when it went public with a valuation of nearly $13 billion, marking one of the most notable debuts of that year.
Groupon’s initial public offering (IPO) and the subsequent years were notoriously challenging. However, the public listings of Lefkofsky’s other two companies, InnerWorkings in 2006 and Echo Global Logistics in 2009, didn’t cause major concerns for investors and performed successfully. InnerWorkings, a supply chain startup that was founded in 2001, was recently sold to private equity for a significantly lower amount than its initial public offering market capitalization.
Throughout its 11-year tenure as a publicly traded company, the stock of Echo Global Logistics experienced a consistent increase in value. Eventually, a private equity firm bought it for a significant 50% premium over its closing trading price in 2021.
There were some controversies surrounding Groupon, including a situation where Lefkofsky allegedly took a significant amount of money from the company’s pre-IPO round. This left the company with limited working capital and resulted in a significant decrease in reported revenue after regulators examined the financials. This unconventional decision has also revealed another transaction based on his previous experiences. He successfully sold his dot-com-era business, Starbelly.com, in 2000, but regrettably, the company that bought it filed for bankruptcy a year later, according to some sources.
Lefkofsky has gained a reputation for having a knack for success, although it may not always translate to long-term gains for investors in his companies.
Tempus is Lefkofsky’s latest endeavor in building a company that will stand the test of time and provide significant value. His wife’s successful breast cancer treatment reportedly inspired him to establish Tempus in 2015.
He expressed his surprise at the lack of data involved in her care during an interview with Forbes last year. “I became obsessed with the notion that there existed a wealth of technology designed for various industries that could be utilized in cancer care to empower physicians to make informed decisions based on data.”
He resigned as Groupon’s CEO in 2015, at a time when the company’s value had dropped to $2.6 billion. Groupon currently has a market capitalization of approximately $600 million. During that period, Lefkofsky directed his attention towards Lightbank, an early-stage venture firm.
It is worth noting that, according to the Tempus S-1 filing, he has not received any salary in the past two years. Unfortunately, the S-1 did not disclose more than two years’ worth of executive compensation for any named officer. Additionally, the filing states that he is entitled to receive a payment of $800,000 and a $800,000 bonus commencing in 2025. Furthermore, despite not receiving a salary, he received a substantial $5.3 million dividend from company stock this year, as indicated in the prospectus. In addition, the filing revealed that Tempus has taken care of the expenses related to $7.5 million worth of preferred shares and has also covered his private plane costs, amounting to $200,000.
Tempus saw a significant increase in revenues, with a growth of 66% from $321 million in 2022 to $531 million in 2023. However, the company continues to experience significant financial losses, with net losses of $290 million in 2023 and $214 million in 2022. Despite the challenging financials, there is a positive development in the operating loss margin, which has decreased from 83% in 2022 to 37% in 2023, as stated in the S-1 filing.
Additionally, Lefkofsky-founded Pathos AI and Tempus have a partnership. Pathos AI is a drug discovery platform that was established in 2020. Pathos compensates Tempus for the privilege of licensing its data. Meanwhile, Ryan Fukushima, the COO of Tempus, also takes on the role of CEO at Pathos and divides his time between the two companies.
There are additional signs that suggest Lefkofsky has a greater level of influence at Tempus than is typically seen.
Tempus has not yet disclosed its principal stockholder’s chart, but it is evident that Lefkofsky, a billionaire, is among them and owns a minimum of 5% of the company. It is clear that he is determined to maintain complete control of the company once it becomes publicly traded. Tempus has given his shares an impressive 30 votes per share. It is not uncommon to have super voting shares, but typically 10 votes per share is more common, while 20 votes is considered to be on the higher side. It is noteworthy that the CEO of a healthcare company has a significantly high level of shareholder influence. It remains to be seen if this influence will be diminished in future S-1s, which would indicate potential investor concerns.
However, Tempus’ S-1 filing makes it abundantly clear that Lefkofsky plays a crucial role in the company’s future. According to a healthcare VC interviewed, Tempus owes much of its growth and success in raising capital to Lefkofsky’s impressive marketing and fundraising abilities.
Tempus secured an impressive $1.42 billion in funding from a range of investors, including Lightbank, NEA, Revolution Growth, T. Rowe Price, Novo Holdings, Franklin Templeton, and Baillie Gifford. The company’s most recent valuation was $8.1 billion in October 2022. Tempus’ S-1 filing disclosed a recent $200 million investment from SoftBank.
No matter the amount of capital raised in its IPO, Tempus’ prospectus clearly states that the company is still a long way from reaching breakeven and will require additional capital in the future. Typically, unprofitable companies make sure to include this information in their prospectuses. However, it is important to note that investors may anticipate Tempus to have a follow-on public offering in the future, which could potentially impact their share price negatively.
Despite generating only $5.5 million in revenue from AI, which represents approximately 1% of its total revenue in 2023, Tempus is actively positioning itself as an AI company.
“Tempus is taking a risk by betting on their growth and the opportune moment for AI in the life sciences industry. However, the company’s current offering has yet to demonstrate its effectiveness,” commented the healthcare investor.
The company stated in its S-1 filing that its AI product line is still in its early stages, but it intends to incorporate AI, including generative AI, into all of its diagnostic tools. Tempus has chosen not to provide any additional comments beyond the information stated in the S-1.
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