All diseases are based on proteins, natural molecules that perform vital cellular functions. Characterizing proteins can reveal disease mechanisms and ways to slow or reverse them, while creating proteins can lead to new drug classes.
The lab’s protein design process is computationally and human resource-intensive. It involves creating a protein structure that could perform a specific function in the body and then finding a protein sequence that could “fold” into that structure. To function, proteins must fold correctly into three-dimensional shapes.
Not everything has to be complicated.
Microsoft introduced EvoDiff, a general-purpose framework that generates “high-fidelity,” “diverse” proteins from protein sequences, this week. Unlike other protein-generating frameworks, EvoDiff doesn’t need target protein structure, eliminating the most laborious step.
Microsoft senior researcher Kevin Yang says EvoDiff, which is open source, could be used to create enzymes for new therapeutics, drug delivery, and industrial chemical reactions.
Yang, one of EvoDiff’s co-creators, told n an email interview that the platform will advance protein engineering beyond structure-function to sequence-first design. EvoDiff shows that ‘protein sequence is all you need’ to controllably design new proteins.
A 640-million-parameter model trained on data from all protein species and functional classes underpins EvoDiff. “Parameters” are the parts of an AI model learned from training data that define its skill at a problem, in this case protein generation. The model was trained using OpenFold sequence alignment data and UniRef50, a subset of UniProt, the UniProt consortium’s protein sequence and functional information database.
Modern image-generating models like Stable Diffusion and DALL-E 2 are diffusion models like EvoDiff. EvoDiff slowly subtracts noise from a protein made almost entirely of noise to move it closer to a protein sequence.
Beyond image generation, diffusion models are being used to design novel proteins like EvoDiff, create music, and synthesize speech.
“If there’s one thing to take away [from EvoDiff], I think it’s this idea that we can — and should — do protein generation over sequence because of the generality, scale, and modularity we can achieve,” Microsoft senior researcher Ava Amini, another co-contributor, said via email. “Our diffusion framework lets us do that and control how we design these proteins to meet functional goals.”
EvoDiff can create new proteins and fill protein design “gaps,” as Amini noted. A protein amino acid sequence that meets criteria can be generated by the model from a part that binds to another protein.
EvoDiff can synthesize “disordered proteins” that don’t fold into a three-dimensional structure because it designs proteins in “sequence space” rather than structure. Disordered proteins enhance or decrease protein activity in biology and disease, like normal proteins.
EvoDiff research isn’t peer-reviewed yet. Microsoft data scientist Sarah Alamdari says the framework needs “a lot more scaling work” before it can be used commercially.
“This is just a 640-million-parameter model, and we may see improved generation quality if we scale up to billions,” Alamdari emailed. WeAI emonstrated some coarse-grained strategies, but to achieve even finer control, we would want to condition EvoDiff on text, chemical information, or other ways to specify the desired function.”
Next, the EvoDiff team will test the model’s lab-generated proteins for viability. Those who are will start work on the next framework.
ChatGPT Will Soon “See, Hear, And Speak” With Its Latest AI Update
A major update to ChatGPT lets the chatbot respond to images and voice conversations. The AI will hear your questions, see the world, and respond.
OpenAI, the non-profit group behind ChatGPT and DALL-E, announced the “multimodal” update in a blog post on Monday, saying it will add voice and image features to ChatGPT Plus and Enterprise over the next two weeks.
The post said it would be available for other groups “soon after.” It was unclear when it would be added to free versions.
Part of this update may be like Siri and Alexa, where you can ask a question and get the answer.
Anyone who’s used ChatGPT knows its AI isn’t a sterile search engine. It can find patterns and solve complex problems creatively and conversationally.
According to OpenAI, “Snap a picture of a landmark while traveling and have a live conversation about what’s interesting about it” could expand these abilities. To decide what to make for dinner, take pictures of your fridge and pantry at home and ask questions for a recipe. Take a photo, circle the problem set, and have it share hints with your child after dinner to help them with a math problem.
This development “opens doors to many creative and accessibility-focused applications,” said OpenAI. They added that it will pose “new risks, such as the potential for malicious actors to impersonate public figures or commit fraud.”
The update currently only allows voice chat with AI trained with specific voice actors. It seems you can’t ask, “Read this IFLScience article in the voice of Stephen Hawking.”
However, current AI technology can achieve that.
Track People and Read Through Walls with Wi-Fi Signals
Recent research has shown that your Wi-Fi router’s signals can be used as a sneaky surveillance system to track people and read text through walls.
Recently, Carnegie Mellon University computer scientists developed a deep neural network that digitally maps human bodies using Wi-Fi signals.
It works like radar. Many sensors detect Wi-Fi radio waves reflected around the room by a person walking. This data is processed by a machine learning algorithm to create an accurate image of moving human bodies.
“The results of the study reveal that our model can estimate the dense pose of multiple subjects, with comparable performance to image-based approaches, by utilizing WiFi signals as the only input,” the researchers wrote in a December 2022 pre-print paper.
The team claims this experimental technology is “privacy-preserving” compared to a camera, despite concerns about intrusion. The algorithm can only detect rough body positions, not facial features and appearance, so it could provide a new way to monitor people anonymously.
They write, “This technology may be scaled to monitor the well-being of elder people or just identify suspicious behaviors at home.”
Recent research at the University of California Santa Barbara showed another way Wi-Fi signals can be used to spy through walls. They used similar technology to detect Wi-Fi signals through a building wall and reveal 3D alphabet letters.
WiFi still imagery is difficult due to motionlessness. “We then took a completely different approach to this challenging problem by tracing the edges of the objects,” said UC Santa Barbara electrical and computer engineering professor Yasamin Mostofi.
A futurist predicts human immortality by 2030
Ray Kurzweil, a computer scientist and futurist, has set specific timelines for humanity’s immortality and AI’s singularity. If his predictions are correct, you can live forever by surviving the next seven years.
Kurzweil correctly predicted in 1990 that a computer would beat human world chess champions by 2000, the rise of portable computers and smartphones, the shift to wireless technology, and the Internet’s explosion before it was obvious.
He even checked his 20-year-old predictions in 2010. He claims that of his 147 1990 predictions for the years leading up to 2010, 115 were “entirely correct” 12 were essentially correct, and 3 were entirely wrong.
Of course, he miscalculates, predicting self-driving cars by 2009.
Though bold (and probably wrong), immortality claims shouldn’t be dismissed out of hand. Kurzweil has made bold predictions like this for years, sticking to his initial dates.
“2029 is the consistent date I have predicted for when an AI will pass a valid Turing test and therefore achieve human levels of intelligence,” Kurzweil said in 2017. “I have set the date 2045 for the ‘Singularity’ which is when we will multiply our effective intelligence a billion fold by merging with the intelligence we have created.”
Kurzweil predicts we will “advance human life expectancy” by “more than a year every year” by 2030. Part of this progress toward the singularity 15 years later will involve nanobots in our bloodstream repairing and connecting our brain to the cloud. When this happens, we can send videos (or emails if you want to think about the duller aspects of being a freaking cyborg) from our brains and backup our memories.
Kurzweil believes the singularity will make humans “godlike” rather than a threat.
We’ll be funnier. Our sexiness will increase. We’ll express love better,” he said in 2015.
“If I want to access 10,000 computers for two seconds, I can do that wirelessly,” he said, “and my cloud computing power multiplies ten thousandfold. We’ll use our neocortex.”
“I’m walking along and Larry Page comes, and I need a clever response, but 300 million modules in my neocortex won’t work. One billion for two seconds. Just like I can multiply my smartphone’s intelligence thousands-fold today, I can access that in the cloud.”
Nanobots can deliver drug payloads into brain tumors, but without significant advances in the next few years, it’s unlikely we’ll get there in seven years. Paralyzed patients can now spell sentences and monkeys can finally play Pong with brain-computer interfaces.
Kurzweil says we’re far from the future, with human-AI interactions mostly the old way. His accuracy will be determined by time. Fortunately, his predictions predict plenty of time.
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